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Volume 5; Issue 9 Suppleme
Main
BMC Proceedings
Volume 5; Issue 9 Suppleme
BMC Proceedings
Volume 5; Issue 9 Suppleme
1
Identifying rare variants from exome scans: the GAW17 experience
Saurabh Ghosh
,
Heike Bickeböller
,
Julia Bailey
,
Joan E Bailey-Wilson
,
Rita Cantor
,
Robert Culverhouse
,
Warwick Daw
,
Anita L DeStefano
,
Corinne D Engelman
,
Anthony Hinrichs
,
Jeanine Houwing-Duistermaat
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 107 KB
Vos balises:
english, 2011
2
Detection of associations with rare and common SNPs for quantitative traits: a nonparametric Bayes-based approach
Lili Ding
,
Tesfaye M Baye
,
Hua He
,
Xue Zhang
,
Brad G Kurowski
,
Lisa J Martin
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 242 KB
Vos balises:
english, 2011
3
A LASSO-based approach to analyzing rare variants in genetic association studies
Jennifer S Brennan
,
Yunxiao He
,
Rose Calixte
,
Epiphanie Nyirabahizi
,
Yuan Jiang
,
Heping Zhang
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 118 KB
Vos balises:
english, 2011
4
Stratify or adjust? Dealing with multiple populations when evaluating rare variants
Robert C Culverhouse
,
Anthony L Hinrichs
,
Brian K Suarez
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 147 KB
Vos balises:
english, 2011
5
Novel tree-based method to generate markers from rare variant data
Yuan Jiang
,
Jennifer S Brennan
,
Rose Calixte
,
Yunxiao He
,
Epiphanie Nyirabahizi
,
Heping Zhang
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 160 KB
Vos balises:
english, 2011
6
Identification of multiple rare variants associated with a disease
Jeesun Jung
,
Jessica Dantzer
,
Yunlong Liu
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 153 KB
Vos balises:
english, 2011
7
Performance of random forests and logic regression methods using mini-exome sequence data
Yoonhee Kim
,
Qing Li
,
Cheryl D Cropp
,
Heejong Sung
,
Juanliang Cai
,
Claire L Simpson
,
Brian Perry
,
Abhijit Dasgupta
,
James D Malley
,
Alexander F Wilson
,
Joan E Bailey-Wilson
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 190 KB
Vos balises:
english, 2011
8
Digging into the extremes: a useful approach for the analysis of rare variants with continuous traits?
Claudia Lamina
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 335 KB
Vos balises:
english, 2011
9
Association screening for genes with multiple potentially rare variants: an inverse-probability weighted clustering approach
Ying Liu
,
Chien Hsun Huang
,
Inchi Hu
,
Shaw-Hwa Lo
,
Tian Zheng
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 401 KB
Vos balises:
english, 2011
10
Assessing the impact of missing genotype data in rare variant association analysis
Reedik Mägi
,
Ashish Kumar
,
Andrew P Morris
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 356 KB
Vos balises:
english, 2011
11
Detection of rare functional variants using group ISIS
Yue S Niu
,
Ning Hao
,
Lingling An
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 137 KB
Vos balises:
english, 2011
12
Application of Bayesian network structure learning to identify causal variant SNPs from resequencing data
Christopher E Schlosberg
,
Tae-Hwi Schwantes-An
,
Weimin Duan
,
Nancy L Saccone
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 218 KB
Vos balises:
english, 2011
13
Successful identification of rare variants using oligogenic segregation analysis as a prioritizing tool for whole-exome sequencing studies
France Gagnon
,
Nicole M Roslin
,
Mathieu Lemire
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 137 KB
Vos balises:
english, 2011
14
Genome-wide case-control study in GAW17 using coalesced rare variants
Libo Wang
,
Vitara Pungpapong
,
Yanzhu Lin
,
Min Zhang
,
Dabao Zhang
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 126 KB
Vos balises:
english, 2011
15
Are quantitative trait-dependent sampling designs cost-effective for analysis of rare and common variants?
Yildiz E Yilmaz
,
Shelley B Bull
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 155 KB
Vos balises:
english, 2011
16
Detection of rare variant effects in association studies: extreme values, iterative regression, and a hybrid approach
Zhaogong Zhang
,
Qiuying Sha
,
Xinli Wang
,
Shuanglin Zhang
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 484 KB
Vos balises:
english, 2011
17
Comparison of statistical approaches to rare variant analysis for quantitative traits
Han Chen
,
Audrey E Hendricks
,
Yansong Cheng
,
Adrienne L Cupples
,
Josée Dupuis
,
Ching-Ti Liu
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 236 KB
Vos balises:
english, 2011
18
Improved power by collapsing rare and common variants based on a data-adaptive forward selection strategy
Yilin Dai
,
Ling Guo
,
Jianping Dong
,
Renfang Jiang
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 152 KB
Vos balises:
english, 2011
19
Comparison of collapsing methods for the statistical analysis of rare variants
Carmen Dering
,
Andreas Ziegler
,
Inke R König
,
Claudia Hemmelmann
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 147 KB
Vos balises:
english, 2011
20
Effect of population stratification analysis on false-positive rates for common and rare variants
Hua He
,
Xue Zhang
,
Lili Ding
,
Tesfaye M Baye
,
Brad G Kurowski
,
Lisa J Martin
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 332 KB
Vos balises:
english, 2011
21
Collapsing-based and kernel-based single-gene analyses applied to Genetic Analysis Workshop 17 mini-exome data
Lun Li
,
Wei Zheng
,
Joon Sang Lee
,
Xianghua Zhang
,
John Ferguson
,
Xiting Yan
,
Hongyu Zhao
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 263 KB
Vos balises:
english, 2011
22
Evaluation of pooled association tests for rare variant identification
Wan-Yu Lin
,
Boshao Zhang
,
Nengjun Yi
,
Guimin Gao
,
Nianjun Liu
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 381 KB
Vos balises:
english, 2011
23
Evaluating methods for the analysis of rare variants in sequence data
Alexander Luedtke
,
Scott Powers
,
Ashley Petersen
,
Alexandra Sitarik
,
Airat Bekmetjev
,
Nathan L Tintle
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 144 KB
Vos balises:
english, 2011
24
Evaluation of a LASSO regression approach on the unrelated samples of Genetic Analysis Workshop 17
Wei Guo
,
Robert C Elston
,
Xiaofeng Zhu
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 234 KB
Vos balises:
english, 2011
25
Identification of genes associated with complex traits by testing the genetic dissimilarity between individuals
Yan V Sun
,
Wei Zhao
,
Kerby A Shedden
,
Sharon LR Kardia
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 132 KB
Vos balises:
english, 2011
26
Application of collapsing methods for continuous traits to the Genetic Analysis Workshop 17 exome sequence data
Yun Ju Sung
,
Treva K Rice
,
Dabeeru C Rao
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 357 KB
Vos balises:
english, 2011
27
Identification of functional genetic variation in exome sequence analysis
Andrew Jaffe
,
Genevieve Wojcik
,
Audrey Chu
,
Asieh Golozar
,
Ankit Maroo
,
Priya Duggal
,
Alison P Klein
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 127 KB
Vos balises:
english, 2011
28
Comparing nominal and real quality scores on next-generation sequencing genotype calls
Alexander H Stram
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 103 KB
Vos balises:
english, 2011
29
Comparison of results from tests of association in unrelated individuals with uncollapsed and collapsed sequence variants using tiled regression
Heejong Sung
,
Yoonhee Kim
,
Juanliang Cai
,
Cheryl D Cropp
,
Claire L Simpson
,
Qing Li
,
Brian C Perry
,
Alexa JM Sorant
,
Joan E Bailey-Wilson
,
Alexander F Wilson
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 158 KB
Vos balises:
english, 2011
30
Enhancing the discovery of rare disease variants through hierarchical modeling
Gary K Chen
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 237 KB
Vos balises:
english, 2011
31
Pathway analysis following association study
Julius S Ngwa
,
Alisa K Manning
,
Jonna L Grimsby
,
Chen Lu
,
Wei V Zhuang
,
Anita L DeStefano
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 183 KB
Vos balises:
english, 2011
32
Gene-based partial least-squares approaches for detecting rare variant associations with complex traits
Asuman S Turkmen
,
Shili Lin
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 195 KB
Vos balises:
english, 2011
33
Genetic Analysis Workshop 17 mini-exome simulation
Laura Almasy
,
Thomas D Dyer
,
Juan Manuel Peralta
,
Jack W Kent
,
Jac C Charlesworth
,
Joanne E Curran
,
John Blangero
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 328 KB
Vos balises:
english, 2011
34
Incorporating predicted functions of nonsynonymous variants into gene-based analysis of exome sequencing data: a comparative study
Peng Wei
,
Xiaoming Liu
,
Yun-Xin Fu
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 268 KB
Vos balises:
english, 2011
35
Identifying causal rare variants of disease through family-based analysis of Genetics Analysis Workshop 17 data set
Wai-Ki Yip
,
Gourab De
,
Benjamin A Raby
,
Nan Laird
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 156 KB
Vos balises:
english, 2011
36
Pathway analysis for family data using nested random-effects models
Jeanine J Houwing-Duistermaat
,
Hae-Won Uh
,
Roula Tsonaka
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 145 KB
Vos balises:
english, 2011
37
An aggregatingU-Test for a genetic association study of quantitative traits
Ming Li
,
Wenjiang Fu
,
Qing Lu
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 147 KB
Vos balises:
english, 2011
38
LASSO model selection with post-processing for a genome-wide association study data set
Allan J Motyer
,
Chris McKendry
,
Sally Galbraith
,
Susan R Wilson
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 130 KB
Vos balises:
english, 2011
39
Interrogating population structure and its impact on association tests
Huaizhen Qin
,
Robert C Elston
,
Xiaofeng Zhu
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 253 KB
Vos balises:
english, 2011
40
Testing gene-environment interactions in gene-based association studies
Xuefeng Wang
,
Huaizhen Qin
,
Nathan J Morris
,
Xiaofeng Zhu
,
Robert C Elston
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 169 KB
Vos balises:
english, 2011
41
Detecting functional rare variants by collapsing and incorporating functional annotation in Genetic Analysis Workshop 17 mini-exome data
Xiting Yan
,
Lun Li
,
Joon Sang Lee
,
Wei Zheng
,
John Ferguson
,
Hongyu Zhao
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 195 KB
Vos balises:
english, 2011
42
Exploration and comparison of methods for combining population- and family-based genetic association using the Genetic Analysis Workshop 17 mini-exome
David W Fardo
,
Anthony R Druen
,
Jinze Liu
,
Lucia Mirea
,
Claire Infante-Rivard
,
Patrick Breheny
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 181 KB
Vos balises:
english, 2011
43
Use of principal components to aggregate rare variants in case-control and family-based association studies in the presence of multiple covariates
Rémi Kazma
,
Thomas J Hoffmann
,
John S Witte
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 1.17 MB
Vos balises:
english, 2011
44
Identifying influential regions in extremely rare variants using a fixed-bin approach
Michael Agne
,
Chien-Hsun Huang
,
Inchi Hu
,
Haitian Wang
,
Tian Zheng
,
Shaw-Hwa Lo
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 370 KB
Vos balises:
english, 2011
45
Challenges and directions: an analysis of Genetic Analysis Workshop 17 data by collapsing rare variants within family data
Peng Lin
,
Michael Hamm
,
Sarah Hartz
,
Zhehao Zhang
,
John P Rice
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 181 KB
Vos balises:
english, 2011
46
Identity by descent and association analysis of dichotomous traits based on large pedigrees
Tian Liu
,
Anbupalam Thalamuthu
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 324 KB
Vos balises:
english, 2011
47
Comparison of genetic association strategies in the presence of rare alleles
Jestinah M Mahachie John
,
Tom Cattaert
,
Lizzy De Lobel
,
François Van Lishout
,
Alain Empain
,
Kristel Van Steen
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 136 KB
Vos balises:
english, 2011
48
Comparative study of statistical methods for detecting association with rare variants in exome-resequencing data
Mohamad Saad
,
Aude Saint Pierre
,
Nora Bohossian
,
Matthias Macé
,
Maria Martinez
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 167 KB
Vos balises:
english, 2011
49
Estimating heritability using family and unrelated individuals data
Priya B Shetty
,
Huaizhen Qin
,
Junghyun Namkung
,
Robert C Elston
,
Xiaofeng Zhu
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 182 KB
Vos balises:
english, 2011
50
Methods for adjusting population structure and familial relatedness in association test for collective effect of multiple rare variants on quantitative traits
Qunyuan Zhang
,
Doyoung Chung
,
Aldi Kraja
,
Ingrid I Borecki
,
Michael A Province
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 188 KB
Vos balises:
english, 2011
51
Family- and population-based designs identify different rare causal variants
Xue Zhang
,
Hua He
,
Lili Ding
,
Tesfaye M Baye
,
Brad G Kurowski
,
Lisa J Martin
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 128 KB
Vos balises:
english, 2011
52
Use of Bayesian networks to dissect the complexity of genetic disease: application to the Genetic Analysis Workshop 17 simulated data
Jia Kang
,
Wei Zheng
,
Lun Li
,
Joon Sang Lee
,
Xiting Yan
,
Hongyu Zhao
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 214 KB
Vos balises:
english, 2011
53
Using the posterior distribution of deviance to measure evidence of association for rare susceptibility variants
Justo Lorenzo-Bermejo
,
Lars Beckmann
,
Jenny Chang-Claude
,
Christine Fischer
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 251 KB
Vos balises:
english, 2011
54
Rare variant density across the genome and across populations
Paola Raska
,
Xiaofeng Zhu
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 580 KB
Vos balises:
english, 2011
55
Identification of genes and variants associated with quantitative traits using Bayesian factor screening
Kith Pradhan
,
Seungtai Chris Yoon
,
Tao Wang
,
Kenny Ye
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 192 KB
Vos balises:
english, 2011
56
Prioritizing single-nucleotide variations that potentially regulate alternative splicing
Mingxiang Teng
,
Yadong Wang
,
Guohua Wang
,
Jeesun Jung
,
Howard J Edenberg
,
Jeremy R Sanford
,
Yunlong Liu
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 596 KB
Vos balises:
english, 2011
57
Comparison of SNP-based and gene-based association studies in detecting rare variants using unrelated individuals
Liping Tong
,
Bamidele Tayo
,
Jie Yang
,
Richard S Cooper
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 225 KB
Vos balises:
english, 2011
58
Collapsing ROC approach for risk prediction research on both common and rare variants
Changshuai Wei
,
Qing Lu
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 217 KB
Vos balises:
english, 2011
59
Region-based and pathway-based QTL mapping using ap-value combination method
Hsin-Chou Yang
,
Chia-Wei Chen
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 283 KB
Vos balises:
english, 2011
60
Combining effects from rare and common genetic variants in an exome-wide association study of sequence data
Hugues Aschard
,
Weiliang Qiu
,
Bogdan Pasaniuc
,
Noah Zaitlen
,
Michael H Cho
,
Vincent Carey
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 207 KB
Vos balises:
english, 2011
61
Pathway-based joint effects analysis of rare genetic variants using Genetic Analysis Workshop 17 exon sequence data
Pingzhao Hu
,
Wei Xu
,
Lu Cheng
,
Xiang Xing
,
Andrew D Paterson
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 171 KB
Vos balises:
english, 2011
62
Large-scale risk prediction applied to Genetic Analysis Workshop 17 mini-exome sequence data
Gengxin Li
,
John Ferguson
,
Wei Zheng
,
Joon Sang Lee
,
Xianghua Zhang
,
Lun Li
,
Jia Kang
,
Xiting Yan
,
Hongyu Zhao
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 207 KB
Vos balises:
english, 2011
63
Evaluating aggregate effects of rare and common variants in the 1000 Genomes Project exon sequencing data using latent variable structural equation modeling
NL Nock
,
LX Zhang
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 800 KB
Vos balises:
english, 2011
64
Evaluating methods for combining rare variant data in pathway-based tests of genetic association
Ashley Petersen
,
Alexandra Sitarik
,
Alexander Luedtke
,
Scott Powers
,
Airat Bekmetjev
,
Nathan L Tintle
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 186 KB
Vos balises:
english, 2011
65
Comparison of scoring methods for the detection of causal genes with or without rare variants
Markus Scholz
,
Holger Kirsten
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 137 KB
Vos balises:
english, 2011
66
Genome-wide association analysis of GAW17 data using an empirical Bayes variable selection
Vitara Pungpapong
,
Libo Wang
,
Yanzhu Lin
,
Dabao Zhang
,
Min Zhang
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 309 KB
Vos balises:
english, 2011
67
New insights into old methods for identifying causal rare variants
Haitian Wang
,
Chien-Hsun Huang
,
Shaw-Hwa Lo
,
Tian Zheng
,
Inchi Hu
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 158 KB
Vos balises:
english, 2011
68
Methods for detecting associations between phenotype and aggregations of rare variants
Fan Yang
,
Chul Joo Kang
,
Paul Marjoram
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 299 KB
Vos balises:
english, 2011
69
Enrichment analysis of genetic association in genes and pathways by aggregating signals from both rare and common variants
Wei Yang
,
C Charles Gu
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 260 KB
Vos balises:
english, 2011
70
Two-stage analyses of sequence variants in association with quantitative traits
Jennifer H Barrett
,
Jérémie Nsengimana
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 184 KB
Vos balises:
english, 2011
71
Distance-based phenotypic association analysis of DNA sequence data
Doyoung Chung
,
Qunyuan Zhang
,
Aldi T Kraja
,
Ingrid B Borecki
,
Michael A Province
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 337 KB
Vos balises:
english, 2011
72
Mutational load analysis of unrelated individuals
Daniel P Howrigan
,
Matthew A Simonson
,
Helen M Kamens
,
Sarah H Stephens
,
Amanda G Wills
,
Marissa A Ehringer
,
Matthew C Keller
,
Matthew B McQueen
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 148 KB
Vos balises:
english, 2011
73
Identification of functional rare variants in genome-wide association studies using stability selection based on random collapsing
Xin Huang
,
Yixin Fang
,
Junhui Wang
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 135 KB
Vos balises:
english, 2011
74
Application of Bayesian regression with singular value decomposition method in association studies for sequence data
Soonil Kwon
,
Xiaofei Yan
,
Jinrui Cui
,
Jie Yao
,
Kai Yang
,
Donald Tsiang
,
Xiaohui Li
,
Jerome I Rotter
,
Xiuqing Guo
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 183 KB
Vos balises:
english, 2011
75
Confidence set of putative quantitative trait loci in whole genome scans with application to the Genetic Analysis Workshop 17 simulated data
Charalampos Papachristou
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 131 KB
Vos balises:
english, 2011
76
Resampling procedures to identify important SNPs using a consensus approach
Christopher Pardy
,
Allan Motyer
,
Susan Wilson
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 188 KB
Vos balises:
english, 2011
77
A weighted accumulation test for associating rare genetic variation with quantitative phenotypes
Chuanhua Xing
,
Glen A Satten
,
Andrew S Allen
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 135 KB
Vos balises:
english, 2011
78
Treating phenotype as given: a simple resampling method for genome-wide association studies
Kai Wang
,
Jian Huang
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 317 KB
Vos balises:
english, 2011
79
Disease risk prediction with rare and common variants
Chengqing Wu
,
Kyle M Walsh
,
Andrew T DeWan
,
Josephine Hoh
,
Zuoheng Wang
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 127 KB
Vos balises:
english, 2011
80
Case-control association testing by graphical modeling for the Genetic Analysis Workshop 17 mini-exome sequence data
Haley J Abel
,
Alun Thomas
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 286 KB
Vos balises:
english, 2011
81
Power of association tests in the presence of multiple causal variants
Yanming Di
,
Gu Mi
,
Luna Sun
,
Rongrong Dong
,
Hong Zhu
,
Lili Peng
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 218 KB
Vos balises:
english, 2011
82
Two-stage study designs combining genome-wide association studies, tag single-nucleotide polymorphisms, and exome sequencing: accuracy of genetic effect estimates
Laura L Faye
,
Shelley B Bull
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 162 KB
Vos balises:
english, 2011
83
Gene-based Higher Criticism methods for large-scale exonic single-nucleotide polymorphism data
Shiquan He
,
Zheyang Wu
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 278 KB
Vos balises:
english, 2011
84
Principal components ancestry adjustment for Genetic Analysis Workshop 17 data
Jing Jin
,
Jane E Cerise
,
Sun Jung Kang
,
Eun Jung Yoon
,
Seungtai Yoon
,
Nancy R Mendell
,
Stephen J Finch
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 121 KB
Vos balises:
english, 2011
85
Regularized regression method for genome-wide association studies
Jin Liu
,
Kai Wang
,
Shuangge Ma
,
Jian Huang
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 303 KB
Vos balises:
english, 2011
86
Identifying variants that contribute to linkage for dichotomous and quantitative traits in extended pedigrees
Wei-Min Chen
,
Ani Manichaikul
,
Stephen S Rich
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 137 KB
Vos balises:
english, 2011
87
Using LASSO regression to detect predictive aggregate effects in genetic studies
Joel B Fontanarosa
,
Yang Dai
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 132 KB
Vos balises:
english, 2011
88
A gene-based approach for testing association of rare alleles
Hongyan Xu
,
Varghese George
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 352 KB
Vos balises:
english, 2011
89
Detecting rare functional variants using a wavelet-based test on quantitative and qualitative traits
Renfang Jiang
,
Jianping Dong
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 140 KB
Vos balises:
english, 2011
90
Propensity score analysis in the Genetic Analysis Workshop 17 simulated data set on independent individuals
Chen Min Lin
,
Fah J Sathirapongsasuti
,
Berit Kerner
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 141 KB
Vos balises:
english, 2011
91
Genetic signal maximization using environmental regression
Phillip E Melton
,
Jack W Kent
,
Thomas D Dyer
,
Laura Almasy
,
John Blangero
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 226 KB
Vos balises:
english, 2011
92
Integrating binary traits with quantitative phenotypes for association mapping of multivariate phenotypes
Indranil Mukhopadhyay
,
Sujayam Saha
,
Saurabh Ghosh
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 126 KB
Vos balises:
english, 2011
93
Joint association analysis of bivariate quantitative and qualitative traits
Mengdie Yuan
,
Guoqing Diao
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 147 KB
Vos balises:
english, 2011
94
Gene-based multiple trait analysis for exome sequencing data
Jingyuan Zhao
,
Anbupalam Thalamuthu
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 162 KB
Vos balises:
english, 2011
95
Identity-by-descent filtering as a tool for the identification of disease alleles in exome sequence data from distant relatives
Nirmala Akula
,
Sevilla Detera-Wadleigh
,
Yin Yao Shugart
,
Michael Nalls
,
Jo Steele
,
Francis J McMahon
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 186 KB
Vos balises:
english, 2011
96
Strategies for selection of subjects for sequencing after detection of a linkage peak
Kristina Allen-Brady
,
James Farnham
,
Lisa Cannon-Albright
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 125 KB
Vos balises:
english, 2011
97
Different approaches for dealing with rare variants in family-based genetic studies: application of a Genetic Analysis Workshop 17 problem
Marcio Augusto Alfonso de Almeida
,
Roseli Andrea Vançan Russo Horimoto
,
Paulo Sérgio Lopes de Oliveira
,
José Eduardo Krieger
,
Alexandre da Costa Pereira
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 146 KB
Vos balises:
english, 2011
98
Using linkage analysis of large pedigrees to guide association analyses
Seung-Hoan Choi
,
Chunyu Liu
,
Josée Dupuis
,
Mark W Logue
,
Gyungah Jun
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 124 KB
Vos balises:
english, 2011
99
Population structure analysis using rare and common functional variants
Tesfaye M Baye
,
Hua He
,
Lili Ding
,
Brad G Kurowski
,
Xue Zhang
,
Lisa J Martin
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 350 KB
Vos balises:
english, 2011
100
A novel method to detect rare variants using both family and unrelated case-control data
Tao Feng
,
Robert C Elston
,
Xiaofeng Zhu
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 141 KB
Vos balises:
english, 2011
101
Linkage analysis merging replicate phenotypes: an application to three quantitative phenotypes in two African samples
Anthony L Hinrichs
,
Robert C Culverhouse
,
Brian K Suarez
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 221 KB
Vos balises:
english, 2011
102
Enriching rare variants using family-specific linkage information
Gang Shi
,
Jeannette Simino
,
Dabeeru C Rao
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 134 KB
Vos balises:
english, 2011
103
Old lessons learned anew: family-based methods for detecting genes responsible for quantitative and qualitative traits in the Genetic Analysis Workshop 17 mini-exome sequence data
Claire L Simpson
,
Cristina M Justice
,
Mera Krishnan
,
Robert Wojciechowski
,
Heejong Sung
,
Jerry Cai
,
Tiffany Green
,
Deyana Lewis
,
Dana Behneman
,
Alexander F Wilson
,
Joan E Bailey-Wilson
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 137 KB
Vos balises:
english, 2011
104
A method to detect single-nucleotide polymorphisms accounting for a linkage signal using covariate-based affected relative pair linkage analysis
Yeunjoo E Song
,
Junghyun Namkung
,
Robert W Shields
,
Daniel J Baechle
,
Sunah Song
,
Robert C Elston
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 237 KB
Vos balises:
english, 2011
105
A pathway-based association analysis model using common and rare variants
Lu Cheng
,
Pingzhao Hu
,
Jenna Sykes
,
Melania Pintilie
,
Geoffrey Liu
,
Wei Xu
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 204 KB
Vos balises:
english, 2011
106
Evaluation of association tests for rare variants using simulated data sets in the Genetic Analysis Workshop 17 data
Wenan Chen
,
Xi Gao
,
Jiexun Wang
,
Chuanyu Sun
,
Wen Wan
,
Degui Zhi
,
Nianjun Liu
,
Xiangning Chen
,
Guimin Gao
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 133 KB
Vos balises:
english, 2011
107
Do rare variant genotypes predict common variant genotypes?
Jack W Kent
,
Vidya Farook
,
Harald HH Göring
,
Thomas D Dyer
,
Laura Almasy
,
Ravindranath Duggirala
,
John Blangero
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 140 KB
Vos balises:
english, 2011
108
Capability of common SNPs to tag rare variants
Xiangqing Sun
,
Junghyun Namkung
,
Xiaofeng Zhu
,
Robert C Elston
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 172 KB
Vos balises:
english, 2011
109
Association tests for rare and common variants based on genotypic and phenotypic measures of similarity between individuals
Anbupalam Thalamuthu
,
Jingyuan Zhao
,
Garrett Teoh Hor Keong
,
Venkateswarlu Kondragunta
,
Indranil Mukhopadhyay
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 264 KB
Vos balises:
english, 2011
110
Pairwise shared genomic segment analysis in high-risk pedigrees: application to Genetic Analysis Workshop 17 exome-sequencing SNP data
Zheng Cai
,
Stacey Knight
,
Alun Thomas
,
Nicola J Camp
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 140 KB
Vos balises:
english, 2011
111
Does pathway analysis make it easier for common variants to tag rare ones?
Hae-Won Uh
,
Roula Tsonaka
,
Jeanine J Houwing-Duistermaat
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 271 KB
Vos balises:
english, 2011
112
SNP set analysis for detecting disease association using exon sequence data
Ru Wang
,
Jie Peng
,
Pei Wang
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 192 KB
Vos balises:
english, 2011
113
Penalized-regression-based multimarker genotype analysis of Genetic Analysis Workshop 17 data
Kristin L Ayers
,
Chrysovalanto Mamasoula
,
Heather J Cordell
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 358 KB
Vos balises:
english, 2011
114
Analysis of human mini-exome sequencing data from Genetic Analysis Workshop 17 using a Bayesian hierarchical mixture model
Julio S Bueno Filho
,
Gota Morota
,
Quoc Tran
,
Matthew J Maenner
,
Lina M Vera-Cala
,
Corinne D Engelman
,
Kristin J Meyers
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 221 KB
Vos balises:
english, 2011
115
Rare variant collapsing in conjunction with mean logp-value and gradient boosting approaches applied to Genetic Analysis Workshop 17 data
Yauheniya Cherkas
,
Nandini Raghavan
,
Stephan Francke
,
Frank DeFalco
,
Marsha A Wilcox
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 209 KB
Vos balises:
english, 2011
116
Search for compound heterozygous effects in exome sequence of unrelated subjects
G Bryce Christensen
,
Christophe G Lambert
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 124 KB
Vos balises:
english, 2011
117
Detecting disease rare alleles using single SNPs in families and haplotyping in unrelated subjects from the Genetic Analysis Workshop 17 data
Aldi T Kraja
,
Jacek Czajkowski
,
Mary F Feitosa
,
Ingrid B Borecki
,
Michael A Province
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 582 KB
Vos balises:
english, 2011
118
Addition of multiple rare SNPs to known common variants improves the association between disease and gene in the Genetic Analysis Workshop 17 data
Jenna Sykes
,
Lu Cheng
,
Wei Xu
,
Ming-Sound Tsao
,
Geoffrey Liu
,
Melania Pintilie
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 246 KB
Vos balises:
english, 2011
119
Finding genes that influence quantitative traits with tree-based clustering
Ian J Wilson
,
Richard AJ Howey
,
Darren T Houniet
,
Mauro Santibanez-Koref
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 414 KB
Vos balises:
english, 2011
120
Identifying rare variants using a Bayesian regression approach
Aimin Yan
,
Nan M Laird
,
Cheng Li
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 150 KB
Vos balises:
english, 2011
121
Identifying rare disease variants in the Genetic Analysis Workshop 17 simulated data: a comparison of several statistical approaches
Ruixue Fan
,
Chien-Hsun Huang
,
Shaw-Hwa Lo
,
Tian Zheng
,
Iuliana Ionita-Laza
Journal:
BMC Proceedings
Année:
2011
Langue:
english
Fichier:
PDF, 133 KB
Vos balises:
english, 2011
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